Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Deba_1513KEGG: Os06g0321700; hypothetical protein; SPTR: Q5ZA87 Os06g0321700 protein. (163 aa)    
Predicted Functional Partners:
Deba_1511
COGs: COG1832 CoA-binding protein; InterPro IPR003781:IPR016040; KEGG: tmz:Tmz1t_3640 CoA-binding domain protein; PFAM: CoA-binding domain protein; SPTR: C4KBQ8 CoA-binding domain protein.
       0.642
Deba_1512
KEGG: sen:SACE_2473 integral membrane protein; SPTR: A4FCJ5 Integral membrane protein.
       0.642
Deba_1510
Hypothetical protein; KEGG: afw:Anae109_3917 TPR repeat-containing protein; SPTR: A7HHA0 Tetratricopeptide TPR_2 repeat protein.
       0.501
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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