STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1532Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gur:Gura_3701 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A5G7T6 Peptidase U62, modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase. (460 aa)    
Predicted Functional Partners:
Deba_1420
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: afw:Anae109_3957 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A7HHD9 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
 
 
0.809
Deba_2865
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR008263; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: C6MMK6 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
 
 
0.799
Deba_1533
Rhodanese domain protein; InterPro IPR001763; KEGG: dma:DMR_29550 rhodanese-like domain protein; SMART: Rhodanese domain protein; SPTR: C4XHS2 Rhodanese-like domain protein; PFAM: Rhodanese-like domain.
     
 0.528
Deba_1531
Glycosyl transferase family 2; InterPro IPR001173; KEGG: chl:Chy400_1885 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1ZM99 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
       0.445
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
      0.423
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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