STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1539COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467; KEGG: dba:Dbac_1016 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C4T0M4 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (517 aa)    
Predicted Functional Partners:
Deba_1540
Two component, sigma54 specific, transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dol:Dole_2807 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: A8ZXY3 Two component, sigma54 specific, transcriptional regulator, Fis fam [...]
 
 0.970
Deba_1078
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR009082:IPR001789:IPR003661; KEGG: mxa:MXAN_1245 sigma-54 dependent DNA-binding response regulator SasR; PFAM: response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; SPTR: Q1DCW9 Sigma-54 dependent DNA-binding response regulator SasR; PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.
 
 0.938
Deba_1917
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR003661:IPR003594:IPR009082:IPR 005467; KEGG: sfu:Sfum_0854 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A0LGJ9 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
 
0.937
Deba_1655
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467:IPR000629; KEGG: dba:Dbac_0629 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C7LX79 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
 
0.935
Deba_1654
Two component, sigma54 specific, transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dba:Dbac_0628 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis fa [...]
 
 0.873
Deba_0060
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2250 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF3 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
 0.871
Deba_2964
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2244 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIE7 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
 0.870
Deba_0059
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF4 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
 
 0.868
Deba_0845
Two component, sigma54 specific, transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Q725P3 Transcriptional regulatory protein zraR; PFAM: Response regulator receiver domain; Bacterial regula [...]
 
 0.868
Deba_0041
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2936 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FKZ1 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
 
 0.865
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.