STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1543COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dac:Daci_3112 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A9BU35 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (691 aa)    
Predicted Functional Partners:
Deba_1544
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1246 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C8NCY5 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region.
 
     0.767
Deba_2248
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
  
 0.765
Deba_2831
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR018522; KEGG: amr:AM1_A0170 TonB-dependent receptor, putative; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ZKH7 TonB-dependent receptor, putative; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
  
  
 0.763
Deba_2486
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: abu:Abu_0340 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ERP1 TonB-dependent receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
   
 0.748
Deba_1545
KEGG: dvl:Dvul_2037 hypothetical protein; SPTR: Q72DI1 Putative uncharacterized protein.
 
     0.736
Deba_1198
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR018181; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0QKD6 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
   
 0.627
Deba_0127
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
   
 0.618
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.559
Deba_2467
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_4061 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8FM13 TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.524
Deba_1635
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dat:HRM2_47540 outer membrane receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C0QHE4 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
   
 0.523
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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