STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1556TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006036; KEGG: kol:Kole_0373 TrkA-N domain protein; PFAM: TrkA-N domain protein; SPTR: B4WH72 TrkA-N domain superfamily; PFAM: TrkA-N domain. (146 aa)    
Predicted Functional Partners:
Deba_1558
Cation transporter; COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: kol:Kole_0375 cation transporter; PFAM: cation transporter; SPTR: B4WH74 Cation transport protein; PFAM: Cation transport protein.
 
 
 0.976
Deba_0609
Potassium uptake protein, TrkH family; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
 
 0.898
Deba_1555
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR011006:IPR013105:IPR011990:IPR 019734:IPR013026; KEGG: nth:Nther_0252 response regulator receiver protein; PFAM: response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: response regulator receiver; SPTR: B2A4S9 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
     0.845
Deba_1554
COGs: COG5002 Signal transduction histidine kinase; InterProIPR000014:IPR003660:IPR003661:IPR003594:IPR 009082:IPR013656:IPR004358:IPR005467; KEGG: dba:Dbac_0336 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C7LVC1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase [...]
 
     0.842
Deba_1557
TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006037:IPR006036; KEGG: nth:Nther_0254 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: B4WH73 TrkA-N domain family; PFAM: TrkA-N domain; TrkA-C domain.
 
    
0.842
Deba_0610
TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037:IPR016040:IPR006036; KEGG: dol:Dole_3218 potassium transporter peripheral membrane component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: A9A0A2 TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain.
 
     0.776
Deba_0352
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.697
Deba_0445
H(+)-transporting two-sector ATPase; COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pca:Pcar_0086 TrkH family potassium uptake protein; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Q3A8E3 Potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.619
Deba_1559
Conserved hypothetical protein; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155; KEGG: dal:Dalk_4240 hypothetical protein; SPTR: B8FM84 Putative uncharacterized protein.
       0.575
Deba_1560
Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: dal:Dalk_4239 protein of unknown function DUF35; PFAM: protein of unknown function DUF35; SPTR: B8FM83 Putative uncharacterized protein; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
       0.575
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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