STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1561Protein of unknown function DUF188; COGs: COG1671 conserved hypothetical protein; InterPro IPR003791; KEGG: azo:azo2224 YaiI/YqxD family protein; PFAM: protein of unknown function DUF188; SPTR: Q2BPA3 Putative uncharacterized protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; Belongs to the UPF0178 family. (149 aa)    
Predicted Functional Partners:
Deba_1562
FAD dependent oxidoreductase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: amr:AM1_2702 glycerol-3-phosphate dehydrogenase domain-containing protein; PFAM: FAD dependent oxidoreductase; SPTR: A0YYL2 Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase.
       0.648
Deba_1409
Protein of unknown function DUF34; COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR011322; KEGG: sth:STH598 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Q67RW0 Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.481
Deba_1563
Drug resistance transporter, Bcr/CflA subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR016196:IPR011701; KEGG: mac:MA1858 membrane transport protein; PFAM: major facilitator superfamily MFS_1; SPTR: Q8TPP8 Membrane transport protein; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily.
       0.442
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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