STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1580Phage tail tape measure protein, TP901 family; COGs: COG5283 Phage-related tail protein; InterPro IPR010090; KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; PFAM: tail tape measure protein TP901 core region; SPTR: C6NTT0 Phage tail length tape-measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region. (993 aa)    
Predicted Functional Partners:
Deba_1574
Baseplate J family protein; COGs: COG3948 Phage-related baseplate assembly protein; InterPro IPR006949:IPR014507; KEGG: drm:Dred_1220 baseplate J family protein; PFAM: Baseplate J family protein; SPTR: B6WRR4 Putative uncharacterized protein; PFAM: Baseplate J-like protein.
 
  
 0.956
Deba_1578
Late control D family protein; COGs: COG3500 Phage protein D; InterPro IPR010277; KEGG: drm:Dred_1216 phage late control D family protein; PFAM: late control D family protein; SPTR: B6WRQ9 Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD).
 
  
 0.956
Deba_1576
KEGG: cvi:CV_0414 hypothetical protein; SPTR: Q7P101 Putative uncharacterized protein; PFAM: Phage P2 GpU.
 
  
 0.951
Deba_1577
COGs: COG4540 Phage P2 baseplate assembly protein gpV; InterPro IPR013046:IPR006531; KEGG: drm:Dred_1217 phage baseplate assembly protein V; PFAM: baseplate assembly protein V; SPTR: B6WRR1 Putative uncharacterized protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Phage-related baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V.
 
  
 0.943
Deba_1587
COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: dvu:DVU1114 virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; SPTR: Q72D17 Virion morphogenesis protein; TIGRFAM: phage virion morphogenesis protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein.
 
    0.938
Deba_1575
GPW/gp25 family protein; InterPro IPR007048; KEGG: drm:Dred_1219 gpW/GP25 family protein; PFAM: GPW/gp25 family protein; SPTR: C2BG15 GPW/gp25 family protein; PFAM: Gene 25-like lysozyme.
 
    0.936
Deba_1583
COGs: COG3498 Phage tail tube protein FII; InterPro IPR006498; KEGG: spe:Spro_4913 major tail tube protein; PFAM: major tail tube protein; SPTR: A8GLL5 Major tail tube protein; PFAM: Phage tail tube protein FII; TIGRFAM: phage contractile tail tube protein, P2 family.
 
  
 0.933
Deba_1584
Conserved hypothetical protein; COGs: COG3497 Phage tail sheath protein FI; KEGG: drm:Dred_1212 hypothetical protein; SPTR: A4J3U3 Putative uncharacterized protein; PFAM: Phage tail sheath protein.
 
  
 0.933
Deba_1579
KEGG: bcj:BCAS0511 putative phage tail protein gpX; SPTR: B4ENQ7 Putative phage tail protein gpX; PFAM: Phage Tail Protein X.
 
    0.926
Deba_1569
Peptidoglycan binding domain protein; COGs: COG3926 Putative secretion activating protein; InterPro IPR008565:IPR018537; KEGG: pde:Pden_4087 hypothetical protein; PFAM: Peptidoglycan binding domain; protein of unknown function DUF847; SPTR: A1B9F9 Putative uncharacterized protein; PFAM: Predicted Peptidoglycan domain; Predicted lysozyme (DUF847).
 
     0.865
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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