STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1589KEGG: dde:Dde_3377 hypothetical protein; SPTR: Q30VX5 Putative uncharacterized protein; PFAM: Phage major capsid protein E. (337 aa)    
Predicted Functional Partners:
Deba_1591
KEGG: dde:Dde_3375 hypothetical protein; SPTR: Q30VX7 Putative uncharacterized protein.
  
    0.788
Deba_1590
KEGG: dde:Dde_3376 hypothetical protein; SPTR: Q30VX6 Putative uncharacterized protein.
       0.702
Deba_1588
Protein of unknown function DUF1320; COGs: COG4387 Mu-like prophage protein gp36; InterPro IPR009752; KEGG: sfu:Sfum_1884 hypothetical protein; PFAM: protein of unknown function DUF1320; SPTR: A0LJG7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1320).
       0.566
Deba_1587
COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: dvu:DVU1114 virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; SPTR: Q72D17 Virion morphogenesis protein; TIGRFAM: phage virion morphogenesis protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein.
       0.563
Deba_1584
Conserved hypothetical protein; COGs: COG3497 Phage tail sheath protein FI; KEGG: drm:Dred_1212 hypothetical protein; SPTR: A4J3U3 Putative uncharacterized protein; PFAM: Phage tail sheath protein.
       0.538
Deba_1596
Protein of unknown function DUF935; COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: dde:Dde_3373 hypothetical protein; PFAM: protein of unknown function DUF935; SPTR: Q30VX9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF935).
  
    0.537
Deba_1585
KEGG: hypothetical protein; SPTR: B9Q803 Putative uncharacterized protein.
       0.522
Deba_1586
Hypothetical protein; KEGG: rfr:Rfer_2949 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; SPTR: Q21U93 Imidazole glycerol phosphate synthase subunit hisH.
       0.522
Deba_1582
KEGG: drm:Dred_1214 hypothetical protein; SPTR: C3WMU0 Predicted protein.
       0.512
Deba_1583
COGs: COG3498 Phage tail tube protein FII; InterPro IPR006498; KEGG: spe:Spro_4913 major tail tube protein; PFAM: major tail tube protein; SPTR: A8GLL5 Major tail tube protein; PFAM: Phage tail tube protein FII; TIGRFAM: phage contractile tail tube protein, P2 family.
       0.512
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.