STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1594KEGG: dde:Dde_3371 hypothetical protein; SPTR: Q30VY1 Putative uncharacterized protein; PFAM: Transposase. (199 aa)    
Predicted Functional Partners:
Deba_1596
Protein of unknown function DUF935; COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: dde:Dde_3373 hypothetical protein; PFAM: protein of unknown function DUF935; SPTR: Q30VX9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF935).
  
    0.799
Deba_1595
Protein of unknown function DUF264; COGs: COG4373 Mu-like prophage FluMu protein gp28; InterPro IPR004921; KEGG: dra:DR_A0094 hypothetical protein; PFAM: protein of unknown function DUF264; SPTR: Q9RZ60 Putative uncharacterized protein; PFAM: Terminase-like family.
       0.795
Deba_1597
Phage head morphogenesis protein, SPP1 gp7 family; COGs: COG2369 conserved hypothetical protein homolog of phage Mu protein gp30; InterPro IPR006528; KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7; PFAM: putative head morphogenesis protein SPP1 gp7; SPTR: Q30VX8 Phage putative head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
       0.795
Deba_1593
KEGG: dde:Dde_3370 hypothetical protein; SPTR: Q30VY2 Putative uncharacterized protein.
       0.789
Deba_1592
KEGG: dde:Dde_3369 hypothetical protein; SPTR: Q30VY3 Putative uncharacterized protein.
       0.773
Deba_1591
KEGG: dde:Dde_3375 hypothetical protein; SPTR: Q30VX7 Putative uncharacterized protein.
  
    0.568
Deba_1590
KEGG: dde:Dde_3376 hypothetical protein; SPTR: Q30VX6 Putative uncharacterized protein.
       0.518
Deba_1589
KEGG: dde:Dde_3377 hypothetical protein; SPTR: Q30VX5 Putative uncharacterized protein; PFAM: Phage major capsid protein E.
       0.499
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.