STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1604COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: saf:SULAZ_0074 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C1DXF9 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (93 aa)    
Predicted Functional Partners:
Deba_1846
Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
 
 0.897
Deba_1608
COGs: COG2842 Uncharacterized ATPase putative transposase; KEGG: dvu:DVU1139 bacteriophage DNA transposition B protein, putative; SPTR: Q72CZ2 Bacteriophage DNA transposition B protein, putative.
       0.790
Deba_1605
KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam, putative; SPTR: Q72CZ5 Host-nuclease inhibitor protein Gam, putative; PFAM: Bacteriophage Mu Gam like protein.
       0.787
Deba_1607
KEGG: dma:DMR_14510 hypothetical protein; SPTR: C4XNG7 Putative uncharacterized protein.
       0.785
Deba_1606
KEGG: gur:Gura_1571 multi-sensor signal transduction histidine kinase.
       0.773
Deba_2783
COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: pdi:BDI_3602 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: B7BGA1 Putative uncharacterized protein (Fragment); PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
     0.764
Deba_1609
Integrase catalytic region; InterProIPR012337:IPR009061:IPR009057:IPR001584:IPR 012287; KEGG: dvu:DVU1140 bacteriophage transposase A protein, putative; PFAM: Integrase catalytic region; SPTR: Q72CZ1 Bacteriophage transposase A protein, putative; PFAM: Mu transposase, C-terminal; Mu DNA binding, I gamma subdomain; Integrase core domain.
       0.755
Deba_1610
KEGG: dvm:DvMF_0711 hypothetical protein; SPTR: B8DK72 Putative uncharacterized protein.
       0.741
Deba_3111
Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
 
0.638
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.621
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.