STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1616Na+ dependent nucleoside transporter domain protein; COGs: COG1972 Nucleoside permease; InterPro IPR002668:IPR011642:IPR011657; KEGG: dat:HRM2_11540 NupC; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; SPTR: C0QLW0 NupC; PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter. (432 aa)    
Predicted Functional Partners:
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
      0.580
Deba_0247
Extracellular solute-binding protein family 3; COGs: COG0295 Cytidine deaminase; InterPro IPR001638:IPR002125:IPR016193; KEGG: dde:Dde_1459 cytidine deaminase; PFAM: extracellular solute-binding protein family 3; CMP/dCMP deaminase zinc-binding; SMART: extracellular solute-binding protein family 3; SPTR: Q311Y8 Cytidine deaminase; PFAM: Bacterial extracellular solute-binding proteins, family 3; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric.
 
  
 0.576
Deba_1615
COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439:IPR017871; KEGG: sfu:Sfum_3314 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A0LNI5 ABC transporter related; PFAM: ABC transporter.
  
    0.558
Deba_1617
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: dal:Dalk_4149 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: B8FMW3 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF342).
       0.548
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
  
 0.494
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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