STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1618Hypothetical protein; KEGG: sus:Acid_4073 alpha-2-macroglobulin domain-containing protein; SPTR: Q01Z77 Alpha-2-macroglobulin domain protein. (255 aa)    
Predicted Functional Partners:
Deba_1619
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dvl:Dvul_2319 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q72ED8 Chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel family.
       0.671
Deba_1620
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dsa:Desal_3399 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: C6BSJ2 OmpA/MotB domain protein; PFAM: OmpA family.
       0.671
Deba_1617
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: dal:Dalk_4149 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: B8FMW3 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF342).
       0.503
Deba_1621
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: dat:HRM2_09140 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q1K450 Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Protein of unknown function (DUF3365); Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.458
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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