STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1631KEGG: dal:Dalk_2368 hypothetical protein; SPTR: B8FAX5 Putative uncharacterized protein. (56 aa)    
Predicted Functional Partners:
Deba_1634
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: dol:Dole_2648 flavodoxin/nitric oxide synthase; SPTR: A8ZX72 Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin.
 
  
 0.764
Deba_1632
KEGG: sat:SYN_00675 putative cytoplasmic protein; SPTR: Q2LV52 Hypothetical cytosolic protein; PFAM: DsrE/DsrF-like family.
       0.747
Deba_1633
NADPH-dependent FMN reductase; COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: B8FLJ7 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase.
 
     0.681
Deba_1630
InterPro IPR011031; KEGG: dal:Dalk_2563 hypothetical protein; SPTR: B8FFJ6 Putative uncharacterized protein.
 
    0.632
Deba_1629
NapC/NirT cytochrome c domain protein; COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR005126:IPR011031; KEGG: dal:Dalk_2564 NapC/NirT cytochrome c domain protein; PFAM: NapC/NirT cytochrome c domain protein; SPTR: B8FFJ7 NapC/NirT cytochrome c domain protein; PFAM: NapC/NirT cytochrome c family, N-terminal region.
 
    0.582
Deba_0421
KEGG: dal:Dalk_4656 integrin-like repeat-containing protein; SPTR: B8FNQ3 Integrin-like repeat-containing protein.
  
     0.523
Deba_0887
COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterProIPR017896:IPR001450:IPR007516:IPR007525:IPR 017900; KEGG: dal:Dalk_2982 coenzyme F420 hydrogenase; PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Coenzyme F420 hydrogenase; SPTR: B8FL37 Coenzyme F420 hydrogenase; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus.
  
     0.506
Deba_0637
Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_3086 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FBM3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.498
Deba_1517
COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dal:Dalk_3654 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: B8FGW2 Amidohydrolase 2; PFAM: Amidohydrolase.
  
     0.464
Deba_2613
DEAD/DEAH box helicase domain protein; COGs: COG4581 Superfamily II RNA helicase; InterProIPR014001:IPR001650:IPR011545:IPR012961:IPR 014021; KEGG: sfu:Sfum_3369 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DSH domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: A0LNP0 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase; DSHCT (NUC185) domain.
  
     0.464
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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