STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1632KEGG: sat:SYN_00675 putative cytoplasmic protein; SPTR: Q2LV52 Hypothetical cytosolic protein; PFAM: DsrE/DsrF-like family. (115 aa)    
Predicted Functional Partners:
Deba_1631
KEGG: dal:Dalk_2368 hypothetical protein; SPTR: B8FAX5 Putative uncharacterized protein.
       0.747
Deba_1634
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: dol:Dole_2648 flavodoxin/nitric oxide synthase; SPTR: A8ZX72 Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin.
 
     0.728
Deba_1633
NADPH-dependent FMN reductase; COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: B8FLJ7 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase.
       0.685
Deba_0645
KEGG: dol:Dole_2002 tripartite ATP-independent periplasmic transporter DctQ; SPTR: A8ZTC3 Tripartite ATP-independent periplasmic transporter DctQ component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
     0.555
Deba_1630
InterPro IPR011031; KEGG: dal:Dalk_2563 hypothetical protein; SPTR: B8FFJ6 Putative uncharacterized protein.
 
     0.515
Deba_1105
Protein of unknown function DUF1291; COGs: COG3370 conserved hypothetical protein; InterPro IPR009710; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; PFAM: protein of unknown function DUF1291; SPTR: B8FM55 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family.
  
     0.461
Deba_2147
Transcriptional regulator, LuxR family; InterPro IPR016032:IPR000792:IPR011991; KEGG: sfu:Sfum_0947 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: A0LGU1 Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family.
  
     0.420
Deba_1218
KEGG: dal:Dalk_4409 putative lipoprotein; SPTR: B8FNB9 Putative lipoprotein.
  
     0.415
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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