Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_1664Outer membrane autotransporter barrel domain protein; COGs: COG3240 Phospholipase/lecithinase/hemolysin; InterPro IPR006315:IPR005546:IPR017186; KEGG: dps:DP2994 lipase 1; PFAM: Autotransporter beta- domain protein; SPTR: Q6AIV7 Related to lipase 1; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain. (613 aa)    
Predicted Functional Partners:
Deba_1348
General secretion pathway protein D; COGs: COG1450 Type II secretory pathway component PulD; InterProIPR005644:IPR004846:IPR004845:IPR001775:IPR 013356; KEGG: dat:HRM2_30110 GspD2; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C5S7Y5 General secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D.
   
  
 0.478
Deba_3016
COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: azc:AZC_0117 outer membrane autotransporter barrel precursor; PFAM: Autotransporter beta- domain protein; SPTR: A8IGP6 Outer membrane autotransporter barrel; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain.
  
   
 0.467
Deba_1343
COGs: COG3156 Type II secretory pathway component PulK; KEGG: dat:HRM2_30150 GspK2; SPTR: C0QK72 GspK2; PFAM: General secretion pathway protein K.
  
   
 0.456
Deba_0194
COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: gdj:Gdia_0206 outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SPTR: B5ZKP4 Outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain.
  
   
0.455
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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