STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1665ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593:IPR003439:IPR017871; KEGG: dma:DMR_44920 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4XRR7 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter. (256 aa)    
Predicted Functional Partners:
Deba_1667
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0387 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X8 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.987
Deba_1668
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0386 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X7 Binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.977
Deba_1214
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: glo:Glov_2032 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B3E3C9 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.946
Deba_1670
Extracellular solute-binding protein family 5; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR006311:IPR000914; KEGG: dae:Dtox_0360 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: C8W4W0 Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
  
 0.942
Deba_1666
ABC transporter related protein; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: gem:GM21_1778 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C6E6J1 Oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter.
 
  
0.938
Deba_1215
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sat:SYN_01341 oligopeptide transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C6MN67 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.902
Deba_1669
Methyltransferase type 11; InterPro IPR013216; KEGG: rci:RCIX1631 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q0W426 Putative uncharacterized protein; PFAM: Methyltransferase domain.
       0.781
Deba_1671
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0867 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: B8FI05 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
       0.781
Deba_1317
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_0314 cobalt transport protein; PFAM: cobalt transport protein; SPTR: D0YS34 Putative ABC transporter associated permease; PFAM: Cobalt transport protein.
  
 
 0.767
Deba_2528
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: dal:Dalk_4068 cobalt transport protein; PFAM: cobalt transport protein; SPTR: B8FM20 Cobalt transport protein; PFAM: Cobalt transport protein.
  
 
 0.760
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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