STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1671TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0867 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: B8FI05 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. (709 aa)    
Predicted Functional Partners:
Deba_1669
Methyltransferase type 11; InterPro IPR013216; KEGG: rci:RCIX1631 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q0W426 Putative uncharacterized protein; PFAM: Methyltransferase domain.
 
     0.857
Deba_1670
Extracellular solute-binding protein family 5; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR006311:IPR000914; KEGG: dae:Dtox_0360 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: C8W4W0 Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
   
 0.826
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.807
Deba_1682
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
 0.793
Deba_1668
COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0386 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X7 Binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component.
     
 0.786
Deba_2476
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_2970 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A0A2 TonB-dependent receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.782
Deba_1665
ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593:IPR003439:IPR017871; KEGG: dma:DMR_44920 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4XRR7 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter.
       0.781
Deba_1666
ABC transporter related protein; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: gem:GM21_1778 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C6E6J1 Oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter.
     
 0.781
Deba_1667
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0387 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X8 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
     
 0.781
Deba_2248
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
 0.776
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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