STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1690KEGG: rru:Rru_A1151 hypothetical protein; SPTR: Q2RV93 Putative uncharacterized protein. (551 aa)    
Predicted Functional Partners:
Deba_1689
KEGG: rru:Rru_A1150 hypothetical protein; SPTR: Q2RV94 Putative uncharacterized protein; PFAM: RAMP superfamily.
  
 
 0.933
Deba_1688
Protein of unknown function DUF324; InterPro IPR005537; KEGG: rru:Rru_A1149 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q2RV95 Putative uncharacterized protein; PFAM: RAMP superfamily.
  
 
 0.931
Deba_1687
KEGG: rru:Rru_A1148 hypothetical protein; SPTR: Q2RV96 Putative uncharacterized protein; PFAM: RAMP superfamily.
  
 
 0.930
Deba_1352
Protein of unknown function DUF324; InterPro IPR005537; KEGG: syn:sll7066 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED2 Putative uncharacterized protein sll7066; PFAM: RAMP superfamily.
  
 
 0.782
Deba_1353
Protein of unknown function DUF324; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: syn:sll7065 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED3 Putative uncharacterized protein sll7065; PFAM: RAMP superfamily.
  
 
 0.703
cas1-2
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
  
 0.447
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.