STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1704Transcriptional regulator, TetR family; InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_2467 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFA0 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family. (231 aa)    
Predicted Functional Partners:
Deba_1702
Phosphoglycerate mutase; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dal:Dalk_0100 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: B8FKJ5 Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family.
 
     0.813
Deba_1705
COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575:IPR008271; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: A8ZZB0 Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family.
 
   
 0.808
Deba_1703
COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: dal:Dalk_2466 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FF99 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
 
     0.686
Deba_0135
Transcriptional regulator, TetR family; InterPro IPR001647:IPR011075:IPR009057:IPR015893; KEGG: nca:Noca_4300 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A1SPR2 Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region.
  
     0.608
Deba_1707
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006176:IPR006108:IPR 013328; KEGG: sth:STH2912 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: C1XLE8 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
  
 0.559
Deba_2725
ATP synthase I; InterPro IPR008413; KEGG: dal:Dalk_2857 ATP synthase I; PFAM: ATP synthase I; SPTR: B8FBA3 ATP synthase I; PFAM: ATP synthase I chain.
  
     0.559
Deba_1706
Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR007160; KEGG: dol:Dole_0364 hypothetical protein; PFAM: protein of unknown function DUF362; SPTR: A8ZT10 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
       0.548
Deba_1502
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006090:IPR013764:IPR009075:IPR009100; KEGG: sse:Ssed_3347 acyl-CoA dehydrogenase-like protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0GJ79 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
  
     0.532
Deba_3065
InterPro IPR011004; KEGG: dal:Dalk_5167 hexapaptide repeat-containing transferase; SPTR: B8FE56 Hexapaptide repeat-containing transferase.
  
 
   0.518
Deba_0390
Molybdopterin dinucleotide-binding region; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657:IPR009010; KEGG: dol:Dole_1621 nitrate reductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: A9A025 Nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
   
 0.504
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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