STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1719Hypothetical protein. (47 aa)    
Predicted Functional Partners:
Deba_1720
Bifunctional DNA primase/polymerase; InterPro IPR015330:IPR000276; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal.
       0.773
Deba_1721
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, putative; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q72BX9 Holin, putative; manually curated; PFAM: HNH endonuclease.
       0.773
Deba_1722
Terminase; COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: pap:PSPA7_5155 phage terminase, large subunit, putative; PFAM: Terminase; SPTR: A6VBQ6 Phage terminase, large subunit, putative; PFAM: Phage Terminase.
       0.773
Deba_1718
DNA binding domain protein, excisionase family; InterPro IPR010093:IPR009061; KEGG: lrl:LC705_01062 predicted ORF; SPTR: C7TI67 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
       0.588
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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