STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Deba_1727Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (463 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 0.940
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
  
 0.883
Deba_0111
Hypothetical protein; KEGG: eic:NT01EI_1130 outer membrane usher protein FimD, putative; SPTR: B8A6Z1 Putative uncharacterized protein.
  
 
 0.872
Deba_1720
Bifunctional DNA primase/polymerase; InterPro IPR015330:IPR000276; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal.
  
 
 0.872
Deba_2241
Bifunctional DNA primase/polymerase; InterPro IPR015330; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal.
  
 
 0.872
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 
 0.864
dnaA-2
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 
 0.861
Deba_2561
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
  
 
 0.831
Deba_2600
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
  
 
 0.831
Deba_1830
DNA primase catalytic core domain protein; COGs: COG0358 DNA primase; InterPro IPR002694:IPR013264; KEGG: sfu:Sfum_3790 DNA primase catalytic core; PFAM: DNA primase catalytic core domain; SMART: zinc finger CHC2-family protein; SPTR: A0LPV7 DNA primase catalytic core, N-terminal domain; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core.
  
 
 0.808
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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