STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1731NUDIX hydrolase; InterPro IPR015797:IPR000086; KEGG: mav:MAV_1301 hydrolase, NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: A0QCA8 Hydrolase, NUDIX family protein; PFAM: NUDIX domain. (154 aa)    
Predicted Functional Partners:
Deba_1732
TPR repeat-containing protein; InterPro IPR019734:IPR001440:IPR011990:IPR013026; KEGG: sfu:Sfum_0684 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A0LG31 Tetratricopeptide TPR_2 repeat protein.
  
    0.777
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
    0.644
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.578
Deba_1734
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR004839:IPR015421:IPR015422:IPR 001176:IPR004838; KEGG: dal:Dalk_0567 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: B8FHI5 Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
  
    0.552
Deba_1733
RNA modification enzyme, MiaB family; COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839:IPR006638:IPR013848:IPR007197; KEGG: sfu:Sfum_0166 RNA modification protein; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LEL6 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family.
  
    0.522
Deba_1727
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
     
 0.438
Deba_2710
Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303:IPR014710:IPR011051:IPR013096; KEGG: chl:Chy400_0637 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; Cupin 2 conserved barrel domain protein; SPTR: B9LJP0 Class II aldolase/adducin family protein; PFAM: Cupin domain; Class II Aldolase and Adducin N-terminal domain.
  
  
 0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.420
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.406
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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