STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1738KEGG: tko:TK0024 hypothetical protein; SPTR: Q5JED6 Putative uncharacterized protein. (48 aa)    
Predicted Functional Partners:
Deba_1737
Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: amc:MADE_03089 metal-dependent phosphohydrolase domain; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: B4RVV1 Metal-dependent phosphohydrolase domain; PFAM: HD domain.
       0.558
Deba_1739
Protein of unknown function UPF0153; InterPro IPR005358:IPR002345; KEGG: dol:Dole_1894 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A8ZSG1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153).
       0.545
Deba_1736
KEGG: ote:Oter_0976 hypothetical protein; SPTR: B1ZXP2 Putative uncharacterized protein.
       0.463
Deba_1740
COGs: COG3086 Positive regulator of sigma E activity; InterPro IPR007359; KEGG: dol:Dole_2512 positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E) RseC/MucC; SPTR: A8ZW82 Positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E), RseC/MucC.
       0.409
Deba_1741
UspA domain protein; InterPro IPR006016:IPR014729; KEGG: dol:Dole_0159 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSQ6 UspA domain protein; PFAM: Universal stress protein family.
       0.409
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.