STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1761InterPro IPR007272; KEGG: mgm:Mmc1_1601 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: C0GRH3 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395). (395 aa)    
Predicted Functional Partners:
Deba_1760
SirA family protein; InterPro IPR001455; KEGG: bay:RBAM_005450 YrkF; PFAM: SirA family protein; SPTR: C8R0L0 SirA family protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.866
Deba_2368
KEGG: tgr:Tgr7_0065 hypothetical protein; SPTR: C0GRH8 Putative uncharacterized protein.
 
     0.771
Deba_1757
Hypothetical protein; InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: A8G0K5 Putative uncharacterized protein.
  
     0.614
Deba_0011
SirA family protein; InterPro IPR001455; KEGG: tye:THEYE_A1506 hypothetical protein; PFAM: SirA family protein; SPTR: B5YGA5 Putative uncharacterized protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.552
Deba_3152
Selenium metabolism protein YedF; InterPro IPR019870:IPR001455; KEGG: dal:Dalk_1678 SirA family protein; SPTR: B8FAT0 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
  
  
 0.552
Deba_1758
InterPro IPR011031; KEGG: gme:Gmet_0536 cytochrome c family protein; SPTR: Q39Y95 Cytochrome c family protein.
  
     0.510
Deba_1762
PpiC-type peptidyl-prolyl cis-trans isomerase; InterProIPR019734:IPR000297:IPR011717:IPR001440:IPR 011990:IPR013026; KEGG: dal:Dalk_4303 TPR repeat-containing protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; Tetratricopeptide TPR_4; TPR repeat-containing protein; SPTR: B8FME5 TPR repeat-containing protein; PFAM: Tetratricopeptide repeat; PPIC-type PPIASE domain.
     
 0.489
Deba_3179
KEGG: dol:Dole_0335 hypothetical protein; SPTR: A8ZSY1 Putative uncharacterized protein.
  
     0.454
cysS-2
Cysteine synthase; COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR005856:IPR002308:IPR001926:IPR009080:IPR 015803:IPR015273:IPR014729:IPR001216; KEGG: dal:Dalk_3820 cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; SPTR: B8FC88 Cysteine synthase; TIGRFAM: cysteine synthase; cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Str [...]
 
    0.448
Deba_2651
InterPro IPR011031; KEGG: gme:Gmet_0534 cytochrome c family protein; SPTR: Q1NVK0 Cytochrome c family protein.
  
     0.432
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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