Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_1768Protein of unknown function DUF610 YibQ; COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: sfu:Sfum_3062 protein of unknown function DUF610, YibQ; PFAM: protein of unknown function DUF610 YibQ; SPTR: A0LMT4 Putative uncharacterized protein; PFAM: Divergent polysaccharide deacetylase. (360 aa)    
Predicted Functional Partners:
Deba_1770
Peptidase M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR011055:IPR016047; KEGG: aeh:Mlg_2569 peptidase M23B; PFAM: Peptidase M23; SPTR: Q0A5H8 Peptidase M23B; PFAM: Peptidase family M23.
 
     0.571
Deba_2329
COGs: COG4786 Flagellar basal body rod protein; InterProIPR019776:IPR001444:IPR010930:IPR020013:IPR 012836; KEGG: geo:Geob_0627 flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; SPTR: B9M0F5 Flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins.
   
   0.514
Deba_1769
COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: gme:Gmet_1853 peptidase S41A, C-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Q39UJ2 Peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.
       0.490
Deba_1771
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.484
Deba_1772
Cell division ATP-binding protein FtsE; COGs: COG2884 ATPase involved in cell division; InterPro IPR005286:IPR003593:IPR003439:IPR017871; KEGG: sth:STH139 cell-division ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q67T69 Cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE.
       0.484
Deba_1773
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
     0.430
Deba_2686
KEGG: ilo:IL0280 hypothetical protein; SPTR: Q5QUM7 Uncharacterized conserved protein; PFAM: SprA-related family.
  
     0.424
Deba_1302
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: drt:Dret_0142 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C8WZG9 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes.
 
   
 0.423
Deba_0952
COGs: COG1286 membrane protein required for colicin V production; InterPro IPR003825; KEGG: dal:Dalk_3649 colicin V production protein; PFAM: Colicin V production protein; SPTR: B8FGV7 Colicin V production protein; PFAM: Colicin V production protein.
 
     0.401
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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