STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1781KEGG: dvu:DVU0040 hypothetical protein; SPTR: Q72G21 Putative uncharacterized protein. (202 aa)    
Predicted Functional Partners:
Deba_0124
Type IV pilus assembly PilZ; InterPro IPR009875:IPR003006; KEGG: dvl:Dvul_0573 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Q728C0 Putative uncharacterized protein; PFAM: PilZ domain.
  
     0.640
Deba_0236
Type IV pilus assembly PilZ; InterPro IPR009875; KEGG: dde:Dde_2940 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Q30X62 Putative uncharacterized protein; PFAM: PilZ domain.
  
     0.556
Deba_1782
InterPro IPR009057:IPR001647:IPR012287; KEGG: mpt:Mpe_A2962 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5SCW5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
       0.492
Deba_3208
KEGG: dal:Dalk_2965 protein of unknown function DUF169; SPTR: B8FL20 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043.
  
     0.487
Deba_0398
KEGG: dvl:Dvul_1182 hypothetical protein; SPTR: A1VCN6 Putative uncharacterized protein.
  
     0.486
Deba_1783
COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A5G784 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
     0.449
Deba_2811
HesB/YadR/YfhF-family protein; Contains Selenocysteine; InterPro IPR000361; KEGG: dsa:Desal_0629 HesB/YadR/YfhF-family protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: C6BYA4 HesB/YadR/YfhF-family protein; manually curated; PFAM: Iron-sulphur cluster biosynthesis.
  
     0.445
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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