STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1804Transcriptional regulator, TetR family; InterPro IPR011075:IPR009057:IPR001647:IPR015893; KEGG: dat:HRM2_00670 HTH-type transcriptional regulator (TetR-family protein); PFAM: regulatory protein TetR; SPTR: Q2N4Y3 Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; YsiA-like protein, C-terminal region. (202 aa)    
Predicted Functional Partners:
Deba_1807
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dat:HRM2_00700 ABC-type transporter, predicted ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1K3J3 ABC transporter related; PFAM: ABC transporter.
 
 
 
 0.959
Deba_1806
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_00690 ABC-type transporter, predicted premease protein; PFAM: protein of unknown function DUF214; SPTR: Q1JW27 Putative uncharacterized protein; manually curated; PFAM: Predicted permease.
 
   
 0.953
Deba_1805
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dat:HRM2_00680 HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q1JW26 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.952
Deba_1808
Conserved hypothetical protein; InterPro IPR010980:IPR002321; KEGG: tbd:Tbd_1357 hypothetical protein; SPTR: Q1K3J4 Putative uncharacterized protein; manually curated; PFAM: Cytochrome C'.
 
     0.925
Deba_1809
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: dat:HRM2_00710 proton-shuffling outer membrane efflux protein (OprM-like); PFAM: outer membrane efflux protein; SPTR: Q1JW30 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   
 0.913
Deba_1801
COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: sfu:Sfum_3815 phage tail sheath protein; PFAM: tail sheath protein; SPTR: C6MK56 Tail sheath protein; PFAM: Phage tail sheath protein.
     
 0.506
Deba_1803
KEGG: sfu:Sfum_3813 hypothetical protein; SPTR: C6MK54 Putative uncharacterized protein.
       0.503
Deba_1802
KEGG: sfu:Sfum_3814 hypothetical protein; SPTR: C6MK55 Putative uncharacterized protein.
       0.494
Deba_1800
InterPro IPR011747; KEGG: sfu:Sfum_3816 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C6MK57 Putative uncharacterized protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
       0.476
Deba_1799
KEGG: sfu:Sfum_3817 hypothetical protein; SPTR: A0LPY4 Putative uncharacterized protein.
       0.459
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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