STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1806Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_00690 ABC-type transporter, predicted premease protein; PFAM: protein of unknown function DUF214; SPTR: Q1JW27 Putative uncharacterized protein; manually curated; PFAM: Predicted permease. (401 aa)    
Predicted Functional Partners:
Deba_1807
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dat:HRM2_00700 ABC-type transporter, predicted ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1K3J3 ABC transporter related; PFAM: ABC transporter.
 
 
 0.987
Deba_1805
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dat:HRM2_00680 HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q1JW26 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.958
Deba_1804
Transcriptional regulator, TetR family; InterPro IPR011075:IPR009057:IPR001647:IPR015893; KEGG: dat:HRM2_00670 HTH-type transcriptional regulator (TetR-family protein); PFAM: regulatory protein TetR; SPTR: Q2N4Y3 Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; YsiA-like protein, C-terminal region.
 
   
 0.953
Deba_1808
Conserved hypothetical protein; InterPro IPR010980:IPR002321; KEGG: tbd:Tbd_1357 hypothetical protein; SPTR: Q1K3J4 Putative uncharacterized protein; manually curated; PFAM: Cytochrome C'.
 
     0.927
Deba_1809
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: dat:HRM2_00710 proton-shuffling outer membrane efflux protein (OprM-like); PFAM: outer membrane efflux protein; SPTR: Q1JW30 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
  
 0.918
Deba_1465
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: dat:HRM2_08310 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0QJU1 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter.
 
 
 0.792
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.761
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.761
Deba_1196
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mja:MJ0121 sn-glycerol-3-phosphate transport ATP-binding protein (UgpC); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q57585 Uncharacterized ABC transporter ATP-binding protein MJ0121.
  
 
 0.750
Deba_1117
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.556
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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