STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1821KEGG: dde:Dde_0917 hypothetical protein; SPTR: Q314C8 Putative uncharacterized protein; PFAM: Terminase-like family. (507 aa)    
Predicted Functional Partners:
Deba_1819
InterPro IPR006528; KEGG: dde:Dde_0919 phage putative head morphogenesis protein, SPP1 gp7; PFAM: putative head morphogenesis protein SPP1 gp7; SPTR: Q314C6 Phage putative head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
 
    0.885
Deba_1816
Site-specific DNA-methyltransferase (adenine-specific); COGs: COG3392 Adenine-specific DNA methylase; InterPro IPR002052:IPR002294:IPR012327; KEGG: dde:Dde_0922 adenine-specific DNA methylase-like protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q314C3 Adenine-specific DNA methylase-like; PFAM: D12 class N6 adenine-specific DNA methyltransferase.
 
     0.859
Deba_1826
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: sfu:Sfum_3796 phage integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LPW3 Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
 
    0.856
Deba_1834
KEGG: sfu:Sfum_3786 hypothetical protein; SPTR: A0LPV3 Putative uncharacterized protein.
  
    0.835
Deba_1835
KEGG: sfu:Sfum_3785 hypothetical protein; SPTR: A0LPV2 Putative uncharacterized protein.
  
    0.835
Deba_1830
DNA primase catalytic core domain protein; COGs: COG0358 DNA primase; InterPro IPR002694:IPR013264; KEGG: sfu:Sfum_3790 DNA primase catalytic core; PFAM: DNA primase catalytic core domain; SMART: zinc finger CHC2-family protein; SPTR: A0LPV7 DNA primase catalytic core, N-terminal domain; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core.
  
    0.800
Deba_1822
KEGG: dde:Dde_1910 hypothetical protein; SPTR: Q310D9 Putative uncharacterized protein.
       0.795
Deba_1823
KEGG: sfu:Sfum_3799 hypothetical protein; SPTR: Q310D8 Putative uncharacterized protein.
       0.795
Deba_1801
COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: sfu:Sfum_3815 phage tail sheath protein; PFAM: tail sheath protein; SPTR: C6MK56 Tail sheath protein; PFAM: Phage tail sheath protein.
 
    0.789
Deba_1794
COGs: COG3500 Phage protein D; KEGG: dde:Dde_0938 phage protein D-like; SPTR: Q314A7 Phage protein D-like; PFAM: Phage late control gene D protein (GPD).
 
     0.778
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.