STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1825KEGG: dde:Dde_1913 hypothetical protein; SPTR: Q310D6 Putative uncharacterized protein; Belongs to the 'phage' integrase family. (124 aa)    
Predicted Functional Partners:
Deba_1826
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: sfu:Sfum_3796 phage integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LPW3 Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
       0.790
Deba_1824
KEGG: sfu:Sfum_3798 hypothetical protein; SPTR: Q314D1 Putative uncharacterized protein.
       0.694
Deba_1822
KEGG: dde:Dde_1910 hypothetical protein; SPTR: Q310D9 Putative uncharacterized protein.
       0.509
Deba_1823
KEGG: sfu:Sfum_3799 hypothetical protein; SPTR: Q310D8 Putative uncharacterized protein.
       0.509
Deba_1821
KEGG: dde:Dde_0917 hypothetical protein; SPTR: Q314C8 Putative uncharacterized protein; PFAM: Terminase-like family.
       0.508
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.