STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1840KEGG: sfu:Sfum_3780 hypothetical protein; SPTR: A0LPU7 Putative uncharacterized protein. (388 aa)    
Predicted Functional Partners:
Deba_1839
KEGG: dde:Dde_1930 hypothetical protein; SPTR: Q310B9 Putative uncharacterized protein.
 
     0.950
Deba_1837
RNA polymerase, sigma-24 subunit, ECF subfamily; InterPro IPR018170:IPR014284; KEGG: dde:Dde_1928 sigma-24 (FecI-like); SPTR: C6MK24 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.767
Deba_1841
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response).
 
     0.752
Deba_2602
KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.716
Deba_2563
KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.712
Deba_1791
KEGG: sfu:Sfum_3825 hypothetical protein; SPTR: A0LPZ2 Putative uncharacterized protein; PFAM: Phage-related baseplate assembly protein.
  
     0.686
Deba_1794
COGs: COG3500 Phage protein D; KEGG: dde:Dde_0938 phage protein D-like; SPTR: Q314A7 Phage protein D-like; PFAM: Phage late control gene D protein (GPD).
  
     0.681
Deba_1792
Protein of unknown function DUF1353; InterPro IPR010767; KEGG: dde:Dde_0940 hypothetical protein; PFAM: protein of unknown function DUF1353; SPTR: C6MK65 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1353).
  
     0.679
Deba_1798
InterPro IPR010090; KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; PFAM: tail tape measure protein TP901 core region; SPTR: A0LPY5 Phage tail tape measure protein, TP901 family; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region.
  
     0.664
Deba_1789
PaaR repeat-containing protein; InterPro IPR008727; KEGG: sfu:Sfum_3827 PaaR repeat-containing protein; SPTR: Q310H1 Putative uncharacterized protein; PFAM: PAAR motif.
  
     0.629
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.