STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1842KEGG: sfu:Sfum_3778 hypothetical protein; SPTR: C6MK19 Putative uncharacterized protein. (80 aa)    
Predicted Functional Partners:
Deba_1843
KEGG: dde:Dde_1934 putative bacteriophage-related protein; SPTR: Q310B5 Putative bacteriophage-related protein; PFAM: Protein of unknown function (DUF2924).
       0.691
ADK85210.1
KEGG: sfu:Sfum_3775 putative phage-related protein; SPTR: A0LPU2 Putative phage-related protein; tmRNA as predicted by Rfam (RF00023), score 199.67.
       0.691
Deba_1844
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dde:Dde_1935 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Q310B4 Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain.
       0.684
Deba_1841
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response).
       0.423
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.