STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1907KEGG: dsa:Desal_1511 hypothetical protein; SPTR: C6BS97 Putative uncharacterized protein. (55 aa)    
Predicted Functional Partners:
Deba_1908
SSS sodium solute transporter superfamily; COGs: COG0591 Na+/proline symporter; InterPro IPR018212:IPR001734:IPR019900; KEGG: dsa:Desal_1510 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: C6BS96 Na+/solute symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.590
Deba_1909
KEGG: dol:Dole_2440 hypothetical protein; SPTR: A8ZW10 Putative uncharacterized protein.
       0.426
Deba_1905
VWA containing CoxE family protein; COGs: COG3825 conserved hypothetical protein; InterPro IPR008912; KEGG: gme:Gmet_0107 hypothetical protein; PFAM: VWA containing CoxE family protein; SPTR: Q39ZG8 Putative uncharacterized protein; PFAM: VWA domain containing CoxE-like protein.
       0.423
Deba_1906
AAA ATPase central domain protein; COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR003959; KEGG: dae:Dtox_3608 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: C8VW33 AAA ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA).
       0.423
Deba_1910
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: mxa:MXAN_5908 histone deacetylase family protein; PFAM: histone deacetylase superfamily; SPTR: Q1CZX8 Histone deacetylase family protein; PFAM: Histone deacetylase domain.
       0.423
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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