STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1926COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: ppd:Ppro_1155 hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; SPTR: A1AN58 Hemolysin A; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein. (252 aa)    
Predicted Functional Partners:
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
  
    0.899
Deba_1928
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gsu:GSU1765 geranyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Q74CA9 Geranyltranstransferase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
    0.751
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.688
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
    0.688
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.670
Deba_1930
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: dvm:DvMF_0123 peptidase M23; PFAM: Peptidase M23; SPTR: B8DNM7 Peptidase M23; PFAM: Peptidase family M23.
       0.646
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.631
Deba_1923
Lysine exporter protein (LYSE/YGGA); COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: cth:Cthe_0680 lysine exporter protein LysE/YggA; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: A3DD86 Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator.
       0.605
Deba_1925
COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: dol:Dole_2226 putative aminopeptidase 1; PFAM: peptidase M18 aminopeptidase I; SPTR: A8ZUJ8 M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18).
       0.587
Deba_1924
KEGG: scl:sce3108 hypothetical protein; SPTR: A8RMA2 Putative uncharacterized protein.
       0.572
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.