STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1960ABC transporter related protein; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sat:SYN_00946 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q2LSN4 ABC transporter ATP-binding protein; PFAM: ABC transporter. (235 aa)    
Predicted Functional Partners:
Deba_1283
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: dal:Dalk_0348 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: B8F925 Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family.
 
 
 0.994
Deba_1284
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: sat:SYN_00415 permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Q2LSQ8 Permease; PFAM: Predicted permease YjgP/YjgQ family.
 
 
 0.994
Deba_1959
Lipopolysaccharide transport periplasmic protein LptA; COGs: COG1934 conserved hypothetical protein; InterPro IPR005653:IPR014340; KEGG: gme:Gmet_1281 OstA-like protein; PFAM: OstA family protein; SPTR: Q39W57 OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA.
  
  
 0.966
Deba_1958
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: pca:Pcar_1941 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Q3A375 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239).
    
  0.961
Deba_1961
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.859
Deba_3124
KpsF/GutQ family protein; COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR004800:IPR001347:IPR000644; KEGG: dol:Dole_2110 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SPTR: A8ZTY1 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.800
lpxA
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.781
Deba_0529
ABC-2 type transporter; COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR000412; KEGG: dma:DMR_22920 putative ABC transporter permease protein; PFAM: ABC-2 type transporter; SPTR: B4D6L5 ABC-2 type transporter; PFAM: ABC-2 type transporter.
      0.769
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.763
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.710
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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