STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfRibosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (180 aa)    
Predicted Functional Partners:
rpmC
Ribosomal protein L29; InterPro IPR001854:IPR018254; KEGG: pca:Pcar_0709 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: A7VR45 Putative uncharacterized protein; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.938
rpsU
Ribosomal protein S21; InterPro IPR018278:IPR001911; KEGG: pca:Pcar_2255 30S ribosomal protein S21; SPTR: Q1JW03 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; manually curated; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.937
rpsI
COGs: COG0103 Ribosomal protein S9; InterProIPR014721:IPR020568:IPR000754:IPR017441:IPR 020574; KEGG: pca:Pcar_1899 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: Q3A3B7 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.935
rpmA
COGs: COG0211 Ribosomal protein L27; InterPro IPR001684; KEGG: dal:Dalk_4115 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: B8FM67 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.935
Deba_1963
Putative PTS IIA-like nitrogen-regulatory protein PtsN; COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR016152; KEGG: sfu:Sfum_2067 putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: A0LJZ8 Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
 
  
 0.934
rpmH
Ribosomal protein L34; InterPro IPR000271; KEGG: drt:Dret_2142 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: C8X4F2 Ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.933
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.932
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.931
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.930
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.929
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.