STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1971Protein of unknown function UPF0016; COGs: COG2119 membrane protein; InterPro IPR001727; KEGG: gvi:gsr0120 hypothetical protein; PFAM: protein of unknown function UPF0016; SPTR: Q7NPD5 Gsr0120 protein; PFAM: Uncharacterized protein family UPF0016. (90 aa)    
Predicted Functional Partners:
Deba_1972
rRNA (guanine-N(2)-)-methyltransferase; COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR002052:IPR000241; KEGG: sfu:Sfum_1764 putative RNA methylase; PFAM: putative RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: A0LJ49 Putative RNA methylase; PFAM: Putative RNA methylase family UPF0020.
 
     0.612
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.