STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1982Tetratricopeptide TPR_2 repeat protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR001440:IPR013105:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_1501 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: A0LID8 TPR repeat-containing protein; PFAM: Tetratricopeptide repeat. (346 aa)    
Predicted Functional Partners:
Deba_0991
TPR repeat-containing protein; InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2862 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif).
 
 
 0.775
Deba_2899
Response regulator receiver protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR001440:IPR013105:IPR001789:IPR019734:IPR 011990:IPR013026:IPR011006; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; PFAM: Response regulator receiver domain; Tetratricopeptide repeat.
  
     0.766
Deba_3209
Sporulation domain protein; InterProIPR007730:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR004838; KEGG: bph:Bphy_0722 TPR repeat-containing protein; PFAM: Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: B5WWJ9 TPR repeat-containing protein (Fragment); PFAM: Sporulation related domain.
  
     0.756
Deba_2571
ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: sfu:Sfum_3853 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SPTR: A0LQ20 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.743
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
 
 0.729
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.716
Deba_2969
KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein.
  
 0.714
Deba_1987
COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; SPTR: Q12AH2 Response regulator receiver domain protein (CheY-like); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.709
Deba_1732
TPR repeat-containing protein; InterPro IPR019734:IPR001440:IPR011990:IPR013026; KEGG: sfu:Sfum_0684 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A0LG31 Tetratricopeptide TPR_2 repeat protein.
 
   
 0.708
Deba_1984
Type II secretion system F domain protein; COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: rfr:Rfer_0801 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Q220K2 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.707
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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