Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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[Homology]
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Deba_1982Tetratricopeptide TPR_2 repeat protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR001440:IPR013105:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_1501 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SPTR: A0LID8 TPR repeat-containing protein; PFAM: Tetratricopeptide repeat. (346 aa)    
Predicted Functional Partners:
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
 
 0.783
Deba_0991
TPR repeat-containing protein; InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2862 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif).
 
 
 0.769
Deba_2899
Response regulator receiver protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR001440:IPR013105:IPR001789:IPR019734:IPR 011990:IPR013026:IPR011006; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; PFAM: Response regulator receiver domain; Tetratricopeptide repeat.
  
     0.766
Deba_3209
Sporulation domain protein; InterProIPR007730:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR004838; KEGG: bph:Bphy_0722 TPR repeat-containing protein; PFAM: Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: B5WWJ9 TPR repeat-containing protein (Fragment); PFAM: Sporulation related domain.
  
     0.756
Deba_1732
TPR repeat-containing protein; InterPro IPR019734:IPR001440:IPR011990:IPR013026; KEGG: sfu:Sfum_0684 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A0LG31 Tetratricopeptide TPR_2 repeat protein.
 
 
 
 0.752
Deba_1987
COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; SPTR: Q12AH2 Response regulator receiver domain protein (CheY-like); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.709
Deba_1984
Type II secretion system F domain protein; COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: rfr:Rfer_0801 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Q220K2 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
     0.702
Deba_1985
Type II secretion system F domain protein; COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: pol:Bpro_2556 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: B7WWM6 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
     0.695
Deba_1989
Type II and III secretion system protein; COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775:IPR007055:IPR004846; KEGG: dvl:Dvul_1112 type II and III secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Q72A78 Type II/III secretion system protein; PFAM: Putative phospholipid-binding domain; Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.689
Deba_1990
COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR013974:IPR017592; KEGG: ctt:CtCNB1_2104 pilus assembly transmembrane protein; PFAM: SAF domain protein; SPTR: B7WWL6 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
 
     0.688
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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