STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1990COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR013974:IPR017592; KEGG: ctt:CtCNB1_2104 pilus assembly transmembrane protein; PFAM: SAF domain protein; SPTR: B7WWL6 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB. (279 aa)    
Predicted Functional Partners:
Deba_1985
Type II secretion system F domain protein; COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: pol:Bpro_2556 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: B7WWM6 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.991
Deba_1987
COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; SPTR: Q12AH2 Response regulator receiver domain protein (CheY-like); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.991
Deba_1989
Type II and III secretion system protein; COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775:IPR007055:IPR004846; KEGG: dvl:Dvul_1112 type II and III secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Q72A78 Type II/III secretion system protein; PFAM: Putative phospholipid-binding domain; Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.991
Deba_1984
Type II secretion system F domain protein; COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: rfr:Rfer_0801 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Q220K2 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.990
Deba_1991
TadE family protein; InterPro IPR012495; KEGG: bph:Bphy_5858 TadE family protein; PFAM: TadE family protein; SPTR: B2JVE5 TadE family protein; PFAM: TadE-like protein.
 
  
 0.989
Deba_1992
InterPro IPR000045; KEGG: aca:ACP_1104 type IV prepilin leader peptidase family protein; PFAM: peptidase A24A prepilin type IV; SPTR: C1F476 Type IV prepilin leader peptidase family protein; PFAM: Type IV leader peptidase family.
 
  
 0.986
Deba_1986
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: dde:Dde_2363 type II/IV secretion system protein; PFAM: type II secretion system protein E; SPTR: Q30YT6 Type II/IV secretion system protein; PFAM: Type II/IV secretion system protein.
 
  
 0.982
Deba_1988
KEGG: dps:DP1532 hypothetical protein; SPTR: Q6AN13 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2134).
 
     0.930
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.822
Deba_1983
COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: dma:DMR_03330 hypothetical protein; PFAM: Metal-dependent hydrolase HDOD; SPTR: C4XH56 Putative uncharacterized protein; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG.
       0.768
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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