STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1999Protein of unknown function DUF181; COGs: COG1944 conserved hypothetical protein; InterProIPR019734:IPR003776:IPR001440:IPR013105:IPR 013026:IPR011990; KEGG: dol:Dole_1241 hypothetical protein; PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: A8ZY40 Putative uncharacterized protein; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family. (583 aa)    
Predicted Functional Partners:
Deba_0400
Conserved hypothetical protein; InterPro IPR011009:IPR000719; KEGG: dsa:Desal_2316 hypothetical protein; SPTR: C6BWU2 Putative uncharacterized protein.
  
 
 0.818
Deba_0055
UspA domain protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: dol:Dole_1330 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZYM9 UspA domain protein; PFAM: Universal stress protein family.
  
 
 0.781
Deba_3227
COGs: COG0778 Nitroreductase; InterPro IPR000415:IPR001450:IPR017896:IPR017900; KEGG: dma:DMR_23050 nitroreductase family protein; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C4XSV4 Nitroreductase family protein; PFAM: Nitroreductase family; 4Fe-4S binding domain.
  
  
 0.776
Deba_3067
KEGG: sfu:Sfum_0040 hypothetical protein; SPTR: A0LE91 Putative uncharacterized protein.
  
     0.771
Deba_0261
COGs: COG0778 Nitroreductase; InterPro IPR001450:IPR000415:IPR017896:IPR017900; KEGG: dol:Dole_1688 nitroreductase; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A9A0J2 Nitroreductase; PFAM: Nitroreductase family.
  
  
 0.769
Deba_0851
UspA domain protein; InterPro IPR014729:IPR006015:IPR006016; KEGG: dol:Dole_1866 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSD3 UspA domain protein; PFAM: Universal stress protein family.
  
 
 0.763
Deba_1217
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gsu:GSU2525 nitroreductase family protein; PFAM: nitroreductase; SPTR: Q74A65 Nitroreductase family protein; PFAM: Nitroreductase family.
 
  
 0.744
Deba_2571
ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: sfu:Sfum_3853 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SPTR: A0LQ20 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.743
Deba_0529
ABC-2 type transporter; COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR000412; KEGG: dma:DMR_22920 putative ABC transporter permease protein; PFAM: ABC-2 type transporter; SPTR: B4D6L5 ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
  
 0.742
Deba_2466
ABC-2 type transporter; InterPro IPR013525:IPR013526:IPR000412; KEGG: ppd:Ppro_1264 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: A1ANG5 ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
  
 0.742
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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