STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2030COGs: COG1715 Restriction endonuclease; InterPro IPR007560; KEGG: ava:Ava_B0091 restriction endonuclease; PFAM: restriction endonuclease; SPTR: Q3M2I3 Restriction endonuclease; PFAM: Restriction endonuclease. (308 aa)    
Predicted Functional Partners:
Deba_0567
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR001450:IPR006311:IPR017909:IPR017896:IPR 017900; KEGG: dal:Dalk_0608 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FJN5 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
    0.618
Deba_2020
Conserved hypothetical protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR019546:IPR001450:IPR017909:IPR017896:IPR 006311; KEGG: dal:Dalk_1084 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8F941 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
   
    0.618
Deba_2021
KEGG: dal:Dalk_1085 iron-sulfur cluster-binding protein; SPTR: B8F942 Iron-sulfur cluster-binding protein.
   
    0.618
Deba_2216
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900:IPR001450; KEGG: dol:Dole_2548 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZWM1 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
    0.618
Deba_2841
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR001450:IPR017896:IPR017900; KEGG: sfu:Sfum_3286 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNF7 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.618
Deba_3155
NIL domain protein; InterPro IPR018449:IPR001450:IPR017896:IPR017900; KEGG: dev:DhcVS_791 iron-sulfur cluster-binding protein, ferredoxin-like protein; PFAM: NIL domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8CNW3 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; NIL domain.
   
    0.618
Deba_2542
COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3429 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS4 Type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
  
 0.595
Deba_2540
Site-specific DNA-methyltransferase (adenine-specific); COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3427 type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS6 Type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
  
 0.594
Deba_2498
KEGG: npu:Npun_F3155 hypothetical protein; SPTR: B2IYN0 Putative uncharacterized protein.
  
  
 0.510
Deba_2029
COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q74EP9 ABC transporter, ATP-binding protein; PFAM: ABC transporter.
       0.493
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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