STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2045Protein of unknown function DUF192; COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: rce:RC1_1079 hypothetical protein; PFAM: protein of unknown function DUF192; SPTR: B4VP74 Uncharacterized ACR, COG1430, putative; PFAM: Uncharacterized ACR, COG1430. (166 aa)    
Predicted Functional Partners:
Deba_2046
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: dvm:DvMF_1479 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B8DLQ1 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
     0.799
Deba_2047
Conserved hypothetical protein; InterPro IPR016024:IPR011989; KEGG: dal:Dalk_2376 hypothetical protein; SPTR: Q1NTE0 HEAT.
       0.528
Deba_2048
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: C8R2S6 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin.
       0.522
Deba_2044
Beta-lactamase domain protein; COGs: COG2015 Alkyl sulfatase and related hydrolase; InterPro IPR016083; KEGG: dal:Dalk_0128 beta-lactamase domain protein; SPTR: B8FKM3 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; SCP-2 sterol transfer family.
       0.468
Deba_0749
Protein of unknown function DUF541; COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: pde:Pden_1932 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Q1N8P4 Outer membrane protein; PFAM: Protein of unknown function (DUF541).
  
     0.410
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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