STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2056ABC transporter related protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: pay:PAU_03719 high-affinity branched-chain amino acid transport atp-binding protein LivF; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7BLV1 High-affinity branched-chain amino acid transport atp-binding protein livf; PFAM: ABC transporter. (232 aa)    
Predicted Functional Partners:
Deba_2058
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sti:Sthe_1537 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: D1C405 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.980
Deba_2059
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR000408:IPR001851; KEGG: hwa:HQ3183A ABC-type branched-chain amino acid transport system, permease protein I; PFAM: inner-membrane translocator; SPTR: Q18FH5 ABC-type branched-chain amino acid transport system, permease protein I; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.965
Deba_1712
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dol:Dole_3011 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ41 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.953
Deba_2057
ABC transporter related protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: pcl:Pcal_0845 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B7A702 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
  
0.912
Deba_1014
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dba:Dbac_2284 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C7LQG4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.910
Deba_1305
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dvm:DvMF_1164 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B8DKF6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.909
Deba_3144
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sfu:Sfum_0858 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.899
Deba_2060
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region.
 
  
 0.868
Deba_1711
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dol:Dole_3010 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ40 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.853
Deba_3145
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: sfu:Sfum_0861 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
  
 0.853
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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