STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2070Wyosine base formation; InterPro IPR017518:IPR017517; KEGG: dal:Dalk_2661 wyosine base formation; SPTR: B8FIW2 Wyosine base formation; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain; TIGRFAM: conserved hypothetical protein TIGR03084; uncharacterized Actinobacterial protein TIGR03083. (260 aa)    
Predicted Functional Partners:
Deba_3258
InterPro IPR010839; KEGG: dal:Dalk_3171 protein of unknown function DUF1446; PFAM: protein of unknown function DUF1446; SPTR: B8FGF2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1446).
 
     0.766
Deba_0307
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 putative O-antigen export system permease protein; PFAM: ABC-2 type transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC-2 type transporter.
  
     0.626
Deba_1502
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006090:IPR013764:IPR009075:IPR009100; KEGG: sse:Ssed_3347 acyl-CoA dehydrogenase-like protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0GJ79 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
  
     0.590
Deba_2489
InterPro IPR002539; KEGG: dal:Dalk_5057 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; SPTR: B8FDU7 MaoC domain protein dehydratase; PFAM: MaoC like domain.
  
     0.579
Deba_1115
COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: gsu:GSU0237 MaoC-like domain-containing protein; PFAM: MaoC domain protein dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Q74GK9 MaoC-like domain protein; PFAM: MaoC like domain.
  
     0.534
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.