Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_2081O-antigen polymerase; InterPro IPR018271:IPR007016; KEGG: tye:THEYE_A0427 O-antigen polymerase family; PFAM: O-antigen polymerase; SPTR: B5YJ59 O-Antigen Polymerase family; PFAM: O-Antigen ligase. (422 aa)    
Predicted Functional Partners:
Deba_2083
COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: tye:THEYE_A0426 glycosyl transferase, family 9; PFAM: glycosyl transferase family 9; SPTR: B5YJ58 Glycosyl transferase, family 9; PFAM: Glycosyltransferase family 9 (heptosyltransferase).
 
  
 0.885
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
  
 0.878
Deba_2084
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_0847 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5URK7 Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
 
  
 0.870
Deba_2085
COGs: COG0438 Glycosyltransferase; InterPro IPR018062:IPR001296; KEGG: acr:Acry_1805 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5FZH6 Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
 
  
 0.866
Deba_2088
Lipopolysaccharide heptosyltransferase III; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011916; KEGG: sfu:Sfum_0370 lipopolysaccharide heptosyltransferase III, putative; PFAM: glycosyl transferase family 9; SPTR: B9YYN7 Lipopolysaccharide heptosyltransferase III; TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase III, putative.
  
 0.860
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
  
  
 0.855
Deba_2086
COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dar:Daro_0157 glycosyl transferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q47JR5 Glycosyl transferase, family 9; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II.
 
  
 0.854
Deba_2092
Lipopolysaccharide heptosyltransferase II; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011910; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II, putative; PFAM: glycosyl transferase family 9; SPTR: Q74AU4 ADP-heptose--LPS heptosyltransferase II, putative; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II.
 
  
 0.844
Deba_2090
COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011908; KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; SPTR: A1HRG7 Lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase II.
 
  
 0.842
Deba_2093
COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: A0LF74 Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase.
     
 0.841
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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