STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2116Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR006311; KEGG: dvm:DvMF_2714 protein of unknown function DUF362; PFAM: protein of unknown function DUF362; SPTR: B8DIZ2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362). (309 aa)    
Predicted Functional Partners:
Deba_2117
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896:IPR017900:IPR001450; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0GLH2 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: MauM/NapG family ferredoxin-type protein.
 
     0.959
Deba_1459
InterPro IPR003660; KEGG: gem:GM21_0283 putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; SPTR: C6DY92 Putative sensor with HAMP domain; PFAM: HAMP domain; Protein of unknown function (DUF3365).
  
     0.512
Deba_2118
Hypothetical protein; KEGG: GI18852 gene product from transcript GI18852-RA; K13174 THO complex subunit 5; SPTR: D0GTE2 ATP-dependent helicase HrpB.
       0.506
Deba_2825
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR010462:IPR014710:IPR011051; KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C0GMJ0 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
 
     0.452
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.