STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2147Transcriptional regulator, LuxR family; InterPro IPR016032:IPR000792:IPR011991; KEGG: sfu:Sfum_0947 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: A0LGU1 Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family. (221 aa)    
Predicted Functional Partners:
Deba_0317
Response regulator receiver protein; COGs: COG1102 Cytidylate kinase; KEGG: dol:Dole_2398 response regulator receiver protein; SPTR: A8ZVL5 Response regulator receiver protein.
  
     0.579
Deba_3113
KEGG: sat:SYN_00080 putative cytoplasmic protein; SPTR: Q2LWI3 Hypothetical cytosolic protein.
  
     0.552
Deba_0903
Heat shock protein Hsp20; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2642 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX66 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.541
Deba_0904
Heat shock protein Hsp20; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2643 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX67 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.541
Deba_3228
Heat shock protein Hsp20; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: afr:AFE_2086 heat shock protein, HSP20 family; PFAM: heat shock protein Hsp20; SPTR: B7J4U6 Heat shock protein, Hsp20 family; PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.541
Deba_2148
InterPro IPR009875; KEGG: sfu:Sfum_3881 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: A0LQ48 Type IV pilus assembly PilZ; PFAM: PilZ domain.
       0.489
Deba_0421
KEGG: dal:Dalk_4656 integrin-like repeat-containing protein; SPTR: B8FNQ3 Integrin-like repeat-containing protein.
  
     0.443
Deba_0618
KEGG: glo:Glov_0605 hypothetical protein; SPTR: B3E3C0 Putative uncharacterized protein; PFAM: Prolipoprotein diacylglyceryl transferase.
  
     0.433
Deba_0316
KEGG: dol:Dole_2397 hypothetical protein; SPTR: A8ZVL4 Putative uncharacterized protein.
  
     0.426
Deba_1632
KEGG: sat:SYN_00675 putative cytoplasmic protein; SPTR: Q2LV52 Hypothetical cytosolic protein; PFAM: DsrE/DsrF-like family.
  
     0.420
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.