STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2164Methyltransferase type 11; COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: ppd:Ppro_0039 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; SPTR: B0VEV0 Putative 3-demethylubiquinone-9 3-O-methyltransferase; PFAM: Methyltransferase domain. (244 aa)    
Predicted Functional Partners:
Deba_2162
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sus:Acid_0658 NAD-dependent epimerase/dehydratase; PFAM: glycosyl transferase family 2; SPTR: Q02BA7 NAD-dependent epimerase/dehydratase; manually curated; PFAM: Glycosyl transferase family 2.
     
 0.777
Deba_2165
Methyltransferase type 12; InterPro IPR013217; KEGG: dma:DMR_45250 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: C4XRV0 Putative uncharacterized protein; PFAM: Methyltransferase domain.
       0.762
Deba_2166
KEGG: nmu:Nmul_A0293 hypothetical protein; SPTR: Q2YCC0 Putative uncharacterized protein.
       0.762
Deba_2163
Methyltransferase type 12; InterPro IPR013217; KEGG: sus:Acid_0659 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: Q02BA6 Methyltransferase type 11; PFAM: Methyltransferase domain.
       0.737
Deba_2173
WbqC-like family protein; InterPro IPR014985; KEGG: psb:Psyr_1578 hypothetical protein; PFAM: WbqC-like family protein; SPTR: Q4ZW46 Putative uncharacterized protein; PFAM: WbqC-like protein family.
 
  
 0.489
Deba_2167
Hypothetical protein; KEGG: rru:Rru_B0007 glycosyl transferase, group 1; SPTR: Q2RMP2 Glycosyl transferase, group 1.
       0.443
Deba_0406
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_0098 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: B8FKJ3 Methyltransferase type 11; PFAM: Methyltransferase domain.
 
 
 0.429
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.422
Deba_1755
Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805:IPR017909; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Q67JM2 Plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] domain.
  
 
 0.408
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.