STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2172DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family. (407 aa)    
Predicted Functional Partners:
Deba_2421
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR011004:IPR000683:IPR001451; KEGG: cbc:CbuK_0696 NAD-dependent oxidoreductase; PFAM: oxidoreductase domain protein; transferase hexapeptide repeat containing protein; SPTR: B6J6Q3 NAD-dependent oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Bacterial transferase hexapeptide (three repeats).
  
 0.908
Deba_2173
WbqC-like family protein; InterPro IPR014985; KEGG: psb:Psyr_1578 hypothetical protein; PFAM: WbqC-like family protein; SPTR: Q4ZW46 Putative uncharacterized protein; PFAM: WbqC-like protein family.
 
  
 0.853
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
  
 0.844
Deba_2171
DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.803
Deba_2170
Hypothetical protein; KEGG: nar:Saro_0601 sulfotransferase; SPTR: Q2GAS5 Sulfotransferase; PFAM: Sulfotransferase domain.
       0.781
Deba_2169
Methyltransferase type 12; InterPro IPR013217; KEGG: cts:Ctha_1954 RNA methyltransferase, TrmA family; PFAM: Methyltransferase type 12; SPTR: A0Y156 Membrane-associated protein.
       0.765
Deba_2103
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: aeh:Mlg_0316 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q0ABW6 Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.704
Deba_2168
KEGG: sse:Ssed_3004 hypothetical protein; SPTR: B7S3F5 Putative uncharacterized protein.
       0.690
Deba_0357
WxcM domain protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterProIPR001451:IPR008894:IPR011004:IPR011051:IPR 018357; KEGG: rfr:Rfer_0690 WxcM-like; PFAM: WxcM domain protein domain protein; transferase hexapeptide repeat containing protein; SPTR: C5T0P5 WxcM domain protein; PFAM: WxcM-like, C-terminal.
 
  
 0.683
Deba_2288
dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR016040:IPR002198:IPR001509:IPR005888; KEGG: rpd:RPD_1571 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q13AT1 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.674
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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