STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Deba_2176Cobyrinic acid ac-diamide synthase; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNT0 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain. (288 aa)    
Predicted Functional Partners:
Deba_2177
COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dds:Ddes_1867 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Q5DUA6 Putative uncharacterized protein orp (Fragment); PFAM: Dinitrogenase iron-molybdenum cofactor.
 
  
 0.958
Deba_2178
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 
 0.875
Deba_2175
Cobyrinic acid ac-diamide synthase; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNS9 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
0.865
Deba_0323
Protein of unknown function DUF134; COGs: COG1342 DNA-binding protein; InterPro IPR002852; KEGG: rru:Rru_A1194 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q2RV50 UPF0251 protein Rru_A1194; PFAM: Protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.733
Deba_2614
Protein of unknown function DUF134; COGs: COG1342 DNA-binding protein; InterPro IPR013324:IPR002852; KEGG: dps:DP2820 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q6AJD1 Putative uncharacterized protein; PFAM: Protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.729
Deba_2677
Beta-lactamase domain protein; COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: adg:Adeg_1793 beta-lactamase domain protein; SPTR: C9R9A2 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
 
     0.713
Deba_0859
COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dba:Dbac_2275 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: C7LQF5 Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
  
 0.649
Deba_2174
Nitrogen-fixing NifU domain protein; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; KEGG: pth:PTH_0581 NifU-like protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: A5D4Q3 NifU homolog; PFAM: NifU-like N terminal domain.
     
 0.584
Deba_0784
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dal:Dalk_2272 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: B8FIH5 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
   
 
 0.556
Deba_1526
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: dat:HRM2_16590 NuoE; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C0QAI2 NuoE; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
   
 
 0.556
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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